Now that I am using Carbonite for most of my map and quest needs I may have to look at going back to Atlas. Seeing as there is really no other reason to keep cartographer

 I also use alfa map for mine. I like it better. I try ed atlas out but really did not like it, ill try again with carbonite thou.

The only reason I use cartographer anymore is for the info in each zone for fishing.

 for some reason Cartographer instance maps dont seem to work for me anymore, so I went back to the old tried and true atlas. but personally I hope this is something you guy's will be working on yourself :)

I dont use Atlas because it isnt very controlled and got my account hacked from a keylogger that may have originated in the addon.  I think the instance maps could be improved some but not much. I am not very worried about the Atlas Loot addon which is very handy because I just run wowhead/wow-loot/thottbot in the background, though many dont.  The addon would make Carbonite very memory heavy if combined with a leveling guide. I would like to see an instance map and even the normal map with icons that show the location of rare spawns and rare bosses in instances, to include rare spawn/rare boss spawns and locations on the map and possibly a patrol route if the mob is not stationary.

 You should totally add in instance maps, I've always been wanting that.

I would like to see instance maps as well.  I used cartographer until blizzard released the 3.X patch that got ready for the wotlk release.  I then tried atlas but I found it too busy. but I will admit I didn't use it a lot.  I'd just like to have a zoomable instance map so I can plan where I want/need to go better; Not have to stop and click open atlas, figure out where I am on the map, then see where I want to go. and finally translate that back onto my minimap.  Just zoom and glance I'd know where I was already and I could put the mob spawn on tracking.

 I'm starting to miss my instance maps and don't want to go back to cartographer just yet for that one feature.

Reiki:

I dont use Atlas because it isnt very controlled and got my account hacked from a keylogger that may have originated in the addon.

You sir, win the idiot of the month award.  An addon cannot give you a keylogger.  You went to a site you shouldn't have gone to and got yourself infected.  Don't blame lua coding that CANNOT CONTAIN AN EXE for your failure at securing your computer.

On topic: I'd personally like to see Carbonite come with it's own instance maps.  I'm very happy giving up older addons I've used for one that supplies all my needs.

 I used to use alphamap. It was my favorite. Wolk updated version  however doesnt work with carbonite anymore :(.   Makes me very sad panda.

 I guess I can only hope Telic will fix apha map or you guys can make instance maps that can comptete with it. 

 I miss having the map appear if I just mouse over the minibutton and dissappear when i pull the mouse away

I also miss seeing my instance maps. when Im inside  Looking at a map with me postioned in one zone till I come out is very interesting  threw the whole fight but...

also Noticed that threw my run of Naxx it placed me back in Eastern Plauge Lands and not Dragonblight